An integrated approach to epitope analysis I: Dimensional reduction, visualization and prediction of MHC binding using amino acid principal components and regression approaches.
Bremel RD, Homan EJ.
Immunome Res. 2010 Nov 2;6:7. doi: 10.1186/1745-7580-6-7. PMID: 21044289

An integrated approach to epitope analysis II: A system for proteomic-scale prediction of immunological characteristics.
Bremel RD, Homan EJ.
Immunome Res. 2010 Nov 2;6:8. doi: 10.1186/1745-7580-6-8. PMID: 2104429

Patterns of predicted T-cell epitopes associated with antigenic drift in influenza H3N2 hemagglutinin.
Homan EJ, Bremel RD.
PLoS One. 2011;6(10):e26711. doi: 10.1371/journal.pone.0026711. PMID: 22039539

Recognition of higher order patterns in proteins: immunologic kernels.
Bremel RD, Homan EJ.
PLoS One. 2013 Jul 29;8(7):e70115. doi: 10.1371/journal.pone.0070115. PMID: 23922927

Are cases of mumps in vaccinated patients attributable to mismatches in both vaccine T-cell and B-cell epitopes? An immunoinformatic analysis.

Homan EJ, Bremel RD.
Hum Vaccin Immunother. 2013 Nov 25;10(2). PMID:24275080

Frequency Patterns of‚ÄČT-Cell Exposed Amino Acid Motifs in Immunoglobulin Heavy Chain Peptides Presented by MHCs.
Homan EJ, Bremel RD.
Front Immunol. 2014 Oct 28;5:541. doi: 10.3389/fimmu.2014.00541. PMID: 25389426

Extensive T-cell epitope repertoire sharing among human proteome, gastrointestinal microbiome, and pathogenic bacteria: implications for the definition of self
Bremel RD, Homan EJ
Front. Immunol., 22 October 2015 |

Zika Virus: Medical Countermeasure Development Challenges
Malone RW, Homan J, Callahan MV, Glasspool-Malone J, Damodaran L, Schneider Ade B, Zimler R, Talton J, Cobb RR, Ruzic I, Smith-Gagen J, Janies D, Wilson J; Zika Response Working Group. PLoS Negl Trop Dis. 2016 Mar 2;10(3):e0004530. doi: